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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20556370_20557604_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20556370 - 20557604
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
CTCTTCCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAATTCTGACCA
Flanking Amino Acid:
EDAKKVCQKLNPSATLLTIG
Intron Amino Acid Position:
1575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67.8
37.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.1
0.57
0.7
73.7
24.7
Minor 5ss
43.6
-0.7
3.1
53.6
44.8
Minor BPS
48.8
-0
1.7
57.81
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929