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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20557773_20558457_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20557773 - 20558457
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTATCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATATCTTTATCT
Flanking Amino Acid:
EGAICYSPPNKRQLQQKQAS
Intron Amino Acid Position:
1519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.9
0.88
0.7
81.2
36.4
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
70
0.71
1.5
83.24
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929