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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20559834_20560224_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20559834 - 20560224
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTTTGAAA
Flanking Amino Acid:
YSILACKIERGPQQHKPRLP
Intron Amino Acid Position:
1387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.5
0.42
1
66.3
38.7
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
75.2
0.79
1.3
83.42
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929