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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20560958_20561874_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20560958 - 20561874
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
ATAAATTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATAAATTCAACA
Flanking Amino Acid:
QEAHHLCKKMNPEAFVLSVR
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
62.2
0.28
1.1
55.7
43.5
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
49
-0
1.7
61.18
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929