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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20563315_20565130_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20563315 - 20565130
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTACAATGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCAATTTTATTT
Flanking Amino Acid:
PLWIGLFSRDGGKHYGWLDG
Intron Amino Acid Position:
1171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
56.7
0.15
1.1
48.7
43.9
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
49.8
0.07
1.6
64.36
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929