About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20568019_20568747_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20568019 - 20568747
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTATGACTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GTGTCTATGACT
Flanking Amino Acid:
TGRLRKIPLDLFDEEFNNQC
Intron Amino Acid Position:
1050

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
74.8
0.56
0.9
70.3
40.1
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
60.6
0.42
1.6
76.75
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929