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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20568909_20570126_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20568909 - 20570126
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TTTTGTCCAACA
Flanking Amino Acid:
LPSISNQAEQDFITSLLPEM
Intron Amino Acid Position:
996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
67.6
0.44
1.2
75
40
Major PPT
78.7
0.65
0.9
74.4
35.3
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
48.8
-0
2.2
72.2
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929