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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20571318_20572306_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20571318 - 20572306
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TACATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
WYVSRKNWYRDYPVNCNMKL
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.9
76.6
37
Minor 5ss
40.5
-1.1
3.3
55.3
48.9
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929