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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20572384_20573483_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20572384 - 20573483
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTTGTATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGACTCTGAAAT
Flanking Amino Acid:
FIDYGYSYHSPLQLFPRFHD
Intron Amino Acid Position:
889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.4
60.4
46
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
78
0.63
1
70
45
Minor 5ss
35.9
-1.6
2.9
46.2
42.5
Minor BPS
53.8
0.2
1.6
69.71
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929