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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20584233_20585649_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20584233 - 20585649
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTGTTGTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCATTTTCTACT
Flanking Amino Acid:
HNGSGLACYKFFHSERVLRT
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
79
0.72
1
69
38.9
Major PPT
59.9
0.22
1.2
59.8
45.2
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
49
0
1.8
68.02
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929