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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20585847_20586025_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20585847 - 20586025
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTACATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATAGCTTTAAAT
Flanking Amino Acid:
TYTNWNSLQPEFSGGCVAMP
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
70.9
0.47
0.9
67.1
38.8
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
64.4
0.53
1.5
76.48
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929