Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20586636_20587876_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20586636 - 20587876

Intron Length:

1241

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATAGAA

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTTAACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGTTCTTTAACC

Flanking Amino Acid:

KSDKSCSYDEGWEMHGNYCY

Intron Amino Acid Position:

504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.2

30.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

72.8

0.51

Minor 5ss

29.8

-2.3

3.3

38.4

46.6

Minor BPS

85.6

1.1

0.9

87.16

29.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005854

20553853 - 20598781

44929