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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20589893_20591715_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20589893 - 20591715
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
TCTTCACTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTCTCTTCACT
Flanking Amino Acid:
KPFDEASSLPEFWRHLDTQC
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
72.4
0.5
0.9
71.7
33
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
70.4
0.72
1.7
88.99
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929