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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20594675_20594940_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20594675 - 20594940
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
CTTCCTTTAAAC
Flanking Amino Acid:
DGKWGICLQPEDGCQDIWEH
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
67.5
40.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
75.9
0.58
0.9
73.3
34.9
Minor 5ss
40.2
-1.1
2.7
49.2
47.1
Minor BPS
67.6
0.53
1.4
72.99
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929