Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20624284_20624702_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20624284 - 20624702

Intron Length:

419

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTAATCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTGTGTTTAATC

Flanking Amino Acid:

DTAYEVCRNQGSNLLTIQDE

Intron Amino Acid Position:

1256

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.11

0.7

90.5

20.5

Major BPS

81.8

0.79

1.1

34.5

Major PPT

77.6

0.62

0.9

40.3

Minor 5ss

34.4

-1.8

3.3

48.7

47.5

Minor BPS

64.9

0.45

1.7

73.46

38.5

Associated Gene:

Gene:

PLA2R1

Ensembl Gene ID:

ENSAPLG00000006239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047888

20622424 - 20660194

37771

ENSAPLT00000006562

20622424 - 20662599

40176