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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20624844_20625908_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20624844 - 20625908
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
ATTTCTATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTTCTATCACA
Flanking Amino Acid:
LQGAVCHVPPKKKLTDYKGL
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.2
41.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.5
0.66
0.8
73.6
35
Minor 5ss
41.5
-0.9
2.8
50.9
41
Minor BPS
56.2
0.19
2
74.53
37

Associated Gene:

Gene:
PLA2R1
Ensembl Gene ID:
ENSAPLG00000006239
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047888
20622424 - 20660194
37771
ENSAPLT00000006562
20622424 - 20662599
40176