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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20628837_20629383_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20628837 - 20629383
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTTTTATAATT
Flanking Amino Acid:
SNWSPIQAVHRQRYNSANVE
Intron Amino Acid Position:
1025

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.5
0.53
1
66.4
44
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
63.8
0.51
1.6
79.74
37

Associated Gene:

Gene:
PLA2R1
Ensembl Gene ID:
ENSAPLG00000006239
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047888
20622424 - 20660194
37771
ENSAPLT00000006562
20622424 - 20662599
40176