Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20639667_20640428_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20639667 - 20640428

Intron Length:

762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTAAT

5'SS Class:

major

3'SS Sequence:

TTCTGTGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCAA

U12 Branch Point Sequence:

TATTCCAGCACT

Flanking Amino Acid:

SYANWNKHQPRHSGGCVAMR

Intron Amino Acid Position:

584

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.2

83.1

30.9

Major BPS

65.6

0.39

0.9

67.3

29.6

Major PPT

75.5

0.57

0.9

73.5

37.1

Minor 5ss

33.3

-1.9

2.8

41.6

38.3

Minor BPS

51.3

0.12

2.2

79.55

41.8

Associated Gene:

Gene:

PLA2R1

Ensembl Gene ID:

ENSAPLG00000006239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047888

20622424 - 20660194

37771

ENSAPLT00000006562

20622424 - 20662599

40176