Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20640599_20642715_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20640599 - 20642715

Intron Length:

2117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTTAAT

5'SS Class:

major

3'SS Sequence:

TCATTTTGTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TTGTCCTGATCA

Flanking Amino Acid:

CPSALVSVTNRFEQAFITSM

Intron Amino Acid Position:

527

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

79.8

35.1

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

69.6

0.44

1.1

75.1

38.7

Minor 5ss

36.1

-1.6

3.1

50.7

45.8

Minor BPS

64.4

0.45

1.8

76.39

40.7

Associated Gene:

Gene:

PLA2R1

Ensembl Gene ID:

ENSAPLG00000006239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047888

20622424 - 20660194

37771

ENSAPLT00000006562

20622424 - 20662599

40176