Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20653377_20654533_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20653377 - 20654533

Intron Length:

1157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCTGAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACAAAT

U12 Branch Point Sequence:

TCTTTCTGAGCA

Flanking Amino Acid:

DEKWGFCPNAESGCDAFWKK

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

74.2

Major BPS

60.7

0.27

65.3

28.1

Major PPT

76.2

0.59

73.9

35.4

Minor 5ss

39.8

-1.1

3.1

53.4

45.6

Minor BPS

59.6

0.3

1.7

71.77

40.4

Associated Gene:

Gene:

PLA2R1

Ensembl Gene ID:

ENSAPLG00000006239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047888

20622424 - 20660194

37771

ENSAPLT00000006562

20622424 - 20662599

40176