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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20670060_20671990_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20670060 - 20671990
Intron Length:
1931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
AEKSKVKWHTETNPLYRGST
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
73.2
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
46.1
-0.4
2.5
57.9
46.7
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
ITGB6
Ensembl Gene ID:
ENSAPLG00000006858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007167
20669958 - 20699560
29603