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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20683057_20683272_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20683057 - 20683272
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CAGATCTGATCA
Flanking Amino Acid:
KCSHVKVGDTVSFSVNISLS
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
45
-0.3
1.7
49.63
41.2

Associated Gene:

Gene:
ITGB6
Ensembl Gene ID:
ENSAPLG00000006858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007167
20669958 - 20699560
29603