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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20683408_20688534_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20683408 - 20688534
Intron Length:
5127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTTCCTTTAAG
Flanking Amino Acid:
ILQLIIAAYQELRSEVELEV
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
78.3
0.7
1
80
32.1
Major PPT
79.3
0.66
0.9
83.5
25.4
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
68.6
0.44
1.8
77.1
39.8

Associated Gene:

Gene:
ITGB6
Ensembl Gene ID:
ENSAPLG00000006858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007167
20669958 - 20699560
29603