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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20688625_20693266_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20688625 - 20693266
Intron Length:
4642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
VTNEQVHIYENYAKLIPGAT
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.9
80.3
37.1
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
ITGB6
Ensembl Gene ID:
ENSAPLG00000006858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007167
20669958 - 20699560
29603