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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20697195_20699500_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20697195 - 20699500
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATGAT
5'SS Class:
major
3'SS Sequence:
CTGTTTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
ATACATTTAACT
Flanking Amino Acid:
GPHCAWCFQENYTDSAGIHG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
74.7
35.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
75.3
0.57
0.9
73.6
37
Minor 5ss
32.3
-2
3.6
48.2
47.9
Minor BPS
64.9
0.55
1.5
78.17
37.4

Associated Gene:

Gene:
ITGB6
Ensembl Gene ID:
ENSAPLG00000006858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007167
20669958 - 20699560
29603