Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20753440_20756575_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20753440 - 20756575

Intron Length:

3136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTTCAG

5'SS Class:

major

3'SS Sequence:

TTATTTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TCTTCTTTTATT

Flanking Amino Acid:

SGTSRGVGFARMESTEKCEA

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

61.8

44.3

Major BPS

90.7

1.01

0.7

19.9

Major PPT

84.5

0.78

0.7

29.5

Minor 5ss

32.6

-2

41.1

45.2

Minor BPS

69.5

0.7

1.6

83.31

38.3

Associated Gene:

Gene:

RBMS1

Ensembl Gene ID:

ENSAPLG00000007282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030278

20735166 - 20825040

89875

ENSAPLT00000007615

20735166 - 20878956

143791