Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20756734_20768631_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20756734 - 20768631

Intron Length:

11898

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

AATTCTGTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGTTTTTAATT

Flanking Amino Acid:

ANGVQAQMAKQQEQDPTNLY

Intron Amino Acid Position:

135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.8

1.01

0.7

85.4

19.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.5

0.62

73.8

40.7

Minor 5ss

34.1

-1.8

2.8

39.9

46.1

Minor BPS

78.1

0.96

86.75

33.6

Associated Gene:

Gene:

RBMS1

Ensembl Gene ID:

ENSAPLG00000007282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030278

20735166 - 20825040

89875

ENSAPLT00000007615

20735166 - 20878956

143791