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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20797672_20824852_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20797672 - 20824852
Intron Length:
27181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTCACTCTAACA
Flanking Amino Acid:
GGSRTPYRKQQSIVPAHPMA
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
60.8
0.34
1.7
72.68
39.3

Associated Gene:

Gene:
RBMS1
Ensembl Gene ID:
ENSAPLG00000007282
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030278
20735166 - 20825040
89875