About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21033357_21036582_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21033357 - 21036582
Intron Length:
3226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGCTAATTAAAT
Flanking Amino Acid:
DHAVKELQQKTENYMQQIRE
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80.7
31.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80.9
0.69
0.9
74.4
39.7
Minor 5ss
46.4
-0.4
3.2
66.5
39
Minor BPS
52.7
0.16
1.9
72.72
43.2

Associated Gene:

Gene:
TANK
Ensembl Gene ID:
ENSAPLG00000007876
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008189
21028867 - 21054998
26132