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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21044747_21046037_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21044747 - 21046037
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATACTTTTAATT
Flanking Amino Acid:
SMQMPIYKMEVKSKKVAPDK
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.4
0.64
1
76.8
36.7
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
67
0.61
1.1
76.14
34.3

Associated Gene:

Gene:
TANK
Ensembl Gene ID:
ENSAPLG00000007876
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008189
21028867 - 21054998
26132