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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21048279_21049819_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21048279 - 21049819
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATATCA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATC
Flanking Amino Acid:
KFKIKPEPETEIQFSMPIQC
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66
33.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
38.4
-1.3
3
45.9
44.1
Minor BPS
87.5
1.16
0.8
90.01
23.7

Associated Gene:

Gene:
TANK
Ensembl Gene ID:
ENSAPLG00000007876
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008189
21028867 - 21054998
26132