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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21094813_21108646_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21094813 - 21108646
Intron Length:
13834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATACTTGATT
Flanking Amino Acid:
LGGGMPGLGQGPPTDAPAVD
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
1
88.3
26.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.6
0.69
0.7
76.5
31.4
Minor 5ss
35.7
-1.6
2.6
43.1
43.8
Minor BPS
60.9
0.42
1.5
72.15
38.4

Associated Gene:

Gene:
PSMD14
Ensembl Gene ID:
ENSAPLG00000007942
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038641
21091822 - 21132644
40823
ENSAPLT00000008284
21091822 - 21132644
40823