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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21240593_21250054_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21240593 - 21250054
Intron Length:
9462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
KTHFEKEDLEGHRTLFIGVH
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.4
0.75
0.7
78.4
29.4
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
SLC4A10
Ensembl Gene ID:
ENSAPLG00000008328
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008740
21180283 - 21333711
153429
ENSAPLT00000046223
21180283 - 21330786
150504