About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21267593_21277771_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
21267593 - 21277771

Intron Length:
10179

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATGTATT

5'SS Class:
strong_major

3'SS Sequence:
ATTTTTTGTTCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTATTAT

U12 Branch Point Sequence:
CCTCTCTTATTA

Flanking Amino Acid:
MRANSIEEIADMILDQQVGS

Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91.9
0.99
0.8
92.6
23.2

Major BPS
84.7
0.86
1
74.3
40.7

Major PPT
85.8
0.8
0.9
85.1
34.9

Minor 5ss
47.8
-0.2
2.5
68.3
42.6

Minor BPS
52.4
0.07
1.6
59.59
41.1

Associated Gene:

Gene:
SLC4A10

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21180283 - 21333711
153429

21180283 - 21330786
150504