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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21299227_21299735_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21299227 - 21299735
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
VFEKILFKFCKEYGLSYLSL
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.8
0.83
0.7
86.1
27.7
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SLC4A10
Ensembl Gene ID:
ENSAPLG00000008328
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008740
21180283 - 21333711
153429
ENSAPLT00000046223
21180283 - 21330786
150504