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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21320658_21321905_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21320658 - 21321905
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTCTGCTTATTT
Flanking Amino Acid:
SSVFLTSILKFIPMPVLYGV
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.7
0.69
0.9
76.4
37.5
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
51.9
0.14
2.1
70.91
46.7

Associated Gene:

Gene:
SLC4A10
Ensembl Gene ID:
ENSAPLG00000008328
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046223
21180283 - 21330786
150504
ENSAPLT00000008740
21180283 - 21333711
153429