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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21340590_21345684_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21340590 - 21345684
Intron Length:
5095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
TCTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
IESDNLKNYNSSTVMARAEK
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
73.7
36.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.8
0.78
0.8
82.3
33
Minor 5ss
35.2
-1.7
3
45.2
42.8
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673