About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21348923_21349791_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21348923 - 21349791
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TAAGCATTAAAT
Flanking Amino Acid:
YEVEDQISAARKFSEMSFVD
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
55.8
0.26
1.8
73.09
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673