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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21352534_21354204_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21352534 - 21354204
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCTTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ACACTCTTCATT
Flanking Amino Acid:
KTDSITVGGYNFWYQMILPP
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
49.5
0.04
1.7
63.91
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673