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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21354853_21355909_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21354853 - 21355909
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATTAA
U12 Branch Point Sequence:
GTTTTGTTAACA
Flanking Amino Acid:
DAQYYQLNCHGPGLPMSTLH
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
54.2
0.1
1.1
46
36.7
Major PPT
77.9
0.63
1
73.3
40.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
66.5
0.51
2
79.59
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673