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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21356035_21356512_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21356035 - 21356512
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCTCTGAAAT
Flanking Amino Acid:
GGAPGGRNLYKVLLESSPNP
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80
0.67
0.9
73.4
36.1
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
60.4
0.4
1.5
77.17
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673