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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21356567_21356746_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21356567 - 21356746
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTACCAAAACC
Flanking Amino Acid:
ISIAAVTNNFLYYISNENGG
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.6
0.71
0.8
74
36.7
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
58
0.23
2
76.5
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673