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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21359781_21359928_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21359781 - 21359928
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
NTTRNWTCPQEKQRTEESTT
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.3
0.7
0.7
81.2
30.5
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673