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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21360065_21363080_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21360065 - 21363080
Intron Length:
3016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATATTTAATG
Flanking Amino Acid:
EISPPEEIRSGDHYLSVVTW
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.2
0.57
0.9
72.8
37.5
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
56.5
0.07
1.5
56.95
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673