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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21365279_21365846_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21365279 - 21365846
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTACA
5'SS Class:
strong_major
3'SS Sequence:
GCATCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTAATTTAAAT
Flanking Amino Acid:
FNGIPDWVYEEEMFGTHSAL
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.7
33.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77
0.61
0.9
73.3
36.9
Minor 5ss
41.6
-0.9
2.5
52.6
44
Minor BPS
58.8
0.35
1.7
76.19
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673