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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21367219_21367318_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21367219 - 21367318
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTGTCCTATTT
Flanking Amino Acid:
ASYYIYDFNTSSIVDETLLH
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
87.5
0.84
0.8
80.3
37.3
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
49.8
0.06
2
75.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673