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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21367372_21368896_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21367372 - 21368896
Intron Length:
1525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAATA
5'SS Class:
major
3'SS Sequence:
AATTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTTTTCTTAATA
Flanking Amino Acid:
FALLQYSYTKLWRHSYTASY
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.3
36
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.4
0.75
0.8
77.5
35.7
Minor 5ss
35.3
-1.7
3.3
48.9
46.9
Minor BPS
81.7
0.99
1
83.67
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673