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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21368972_21369089_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21368972 - 21369089
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
ACTTTGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
CAGTGCTTAATA
Flanking Amino Acid:
SSVILSNTTLDKYKATTVIL
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1
63.1
37.7
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
72.8
0.51
1.1
68.3
41.7
Minor 5ss
47.5
-0.2
2.4
58.8
41.3
Minor BPS
58.7
0.27
1.8
63.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673