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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21369185_21369739_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21369185 - 21369739
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTTGTTTATT
Flanking Amino Acid:
YTTHDLQWISGNQYLHKTAN
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.3
0.59
0.9
73.6
37
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
49.3
0.03
2.3
74.73
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673