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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_21369830_21377182_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21369830 - 21377182
Intron Length:
7353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCCG
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTCTATCACT
Flanking Amino Acid:
IAVPVALLTGKSTDSRKTYT
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
60.4
44.4
Major BPS
80
0.75
1
78.6
31
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
36.7
-1.5
2.9
48.5
41
Minor BPS
57.5
0.32
2
80.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009107
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009592
21339207 - 21377879
38673